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Welcome to Flagship Inn, a Boothbay Harbor Inn

Welcome to the finest choice in Boothbay Harbor, Maine lodging. The pet-friendly Flagship Inn invites you to relax in some of the Boothbay Harbor Region's most comfortable and reasonable accommodations, all guaranteed by AAA and Mobil guide ratings. "Best value" is how our guests describe us! We are locally owned and operated, which allows us to offer the exceptional service of a small inn with the modern amenities of a chain hotel. Our lodging in Boothbay Harbor, Maine is less than a mile from the Atlantic oceanfront and from all downtown Boothbay Harbor has to offer.

The Flagship Inn features 82 modern guest rooms complete with double or king size beds to make your stay a comfortable one. Also enjoy our spacious Family Suites for larger families or spacious extended-stay accommodations.

Compare Us to Boothbay Harbor, Maine Hotels

Our services and amenities at the Flagship Inn are among the very finest. All of our rooms feature free Internet access, Cable TV with HBO, Free long distance calling, electronic key locks, mini fridges, hairdryers, irons, and ironing boards. Enjoy our complimentary Continental breakfast, or join us for coffee and a newspaper in our lobby while our friendly and knowledgeable staff helps you plan your day. Your car is just outside in our ample parking lot, or you can leave it and take a ride around downtown on the seasonal trolley. The Flagship Inn also features a large outdoor heated pool and spa for you to enjoy throughout the late spring and summer season.

The Inn is the perfect place to wrap yourself in the charm of Boothbay Harbor. Whether a family vacation, casual getaway, or comfortable home base, your experience at the Inn will bring you back time and time again. For complete information on our lodging in Boothbay Harbor, Maine please feel free to contact us at (800) 660-5094.

Fall Foliage Festival is coming!  
The dates of the festival are 
Boothbay Railway Village 
586 Wiscasset Rd. 
Boothbay, ME 04537
The Festival is open from 10 am – 4 pm both days. Admission is $2. Steam train tickets are an 
additional $5 each. 

» Maine Maritime Museum
9/11/2014 from Boothbay Harbor Hotel
                                                         Great Goings on at the Maine Mariti...

» Boothbay's 250th Anniversary Celebration
8/14/2014 from Boothbay Harbor Hotel
Boothbay's 250th Anniversary Celebration will include many events.  Join us at the Flagship Inn for a great time.  There will will fireworks! Friday, Aug. 22 – Seafood Festival on the Common. Join the fun on the Boothbay Common...


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"Accommodations are convenient, economical, friendly and clean."