This is an example of a HTML caption with a link.

Welcome to Flagship Inn, a Boothbay Harbor Inn

Welcome to the finest choice in Boothbay Harbor, Maine lodging. The pet-friendly Flagship Inn invites you to relax in some of the Boothbay Harbor Region's most comfortable and reasonable accommodations, all guaranteed by AAA and Mobil guide ratings. "Best value" is how our guests describe us! We are locally owned and operated, which allows us to offer the exceptional service of a small inn with the modern amenities of a chain hotel. Our lodging in Boothbay Harbor, Maine is less than a mile from the Atlantic oceanfront and from all downtown Boothbay Harbor has to offer.

The Flagship Inn features 82 modern guest rooms complete with double or king size beds to make your stay a comfortable one. Also enjoy our spacious Family Suites for larger families or spacious extended-stay accommodations.

Compare Us to Boothbay Harbor, Maine Hotels

Our services and amenities at the Flagship Inn are among the very finest. All of our rooms feature free Internet access, Cable TV with HBO, Free long distance calling, electronic key locks, mini fridges, hairdryers, irons, and ironing boards. Enjoy our complimentary Continental breakfast, or join us for coffee and a newspaper in our lobby while our friendly and knowledgeable staff helps you plan your day. Your car is just outside in our ample parking lot, or you can leave it and take a ride around downtown on the seasonal trolley. The Flagship Inn also features a large outdoor heated pool and spa for you to enjoy throughout the late spring and summer season.

The Inn is the perfect place to wrap yourself in the charm of Boothbay Harbor. Whether a family vacation, casual getaway, or comfortable home base, your experience at the Inn will bring you back time and time again. For complete information on our lodging in Boothbay Harbor, Maine please feel free to contact us at (800) 660-5094.

Looking for some fun outdoor entertainment while at the Flagship Inn?  Tidal Transit rents bikes and Kayaks.  They have some great scenic guided tours.

Paddle around the beautiful islands that dot the Maine coastline.  check-out their website at 


7/27/2014 from Boothbay Harbor Hotel
While visiting the Boothbay Region, you have to check-out the great line-up at the Boothbay Opera House. Thursday, July 31, 2014 7:30 PM Opera House at Boothbay Harbor 86 Townsend Avenue Boothbay Harbor, ME 04538 Named to the   pres...

7/10/2014 from Boothbay Harbor Hotel
T he Maine Maritime Museum is only a 20 mile drive from Boothbay Harbor and the Flagship Inn. Tonight - 6pm     HMS Bounty Disaster author to share details     of iconic ship's tragic end and USCG ...


Arrival Date:

Departure Date:



Promo Code:

* All discount rates verified at check-in.

"Accommodations are convenient, economical, friendly and clean."