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Welcome to Flagship Inn, a Boothbay Harbor Inn

Welcome to the finest choice in Boothbay Harbor, Maine lodging. The pet-friendly Flagship Inn invites you to relax in some of the Boothbay Harbor Region's most comfortable and reasonable accommodations, all guaranteed by AAA and Mobil guide ratings. "Best value" is how our guests describe us! We are locally owned and operated, which allows us to offer the exceptional service of a small inn with the modern amenities of a chain hotel. Our lodging in Boothbay Harbor, Maine is less than a mile from the Atlantic oceanfront and from all downtown Boothbay Harbor has to offer.

The Flagship Inn features 82 modern guest rooms complete with double or king size beds to make your stay a comfortable one. Also enjoy our spacious Family Suites for larger families or spacious extended-stay accommodations.

Compare Us to Boothbay Harbor, Maine Hotels

Our services and amenities at the Flagship Inn are among the very finest. All of our rooms feature free Internet access, Cable TV with HBO, Free long distance calling, electronic key locks, mini fridges, hairdryers, irons, and ironing boards. Enjoy our complimentary Continental breakfast, or join us for coffee and a newspaper in our lobby while our friendly and knowledgeable staff helps you plan your day. Your car is just outside in our ample parking lot, or you can leave it and take a ride around downtown on the seasonal trolley. The Flagship Inn also features a large outdoor heated pool and spa for you to enjoy throughout the late spring and summer season.

The Inn is the perfect place to wrap yourself in the charm of Boothbay Harbor. Whether a family vacation, casual getaway, or comfortable home base, your experience at the Inn will bring you back time and time again. For complete information on our lodging in Boothbay Harbor, Maine please feel free to contact us at (800) 660-5094.

The 41st annual Fisherman's Festival is April 25-27th to celebrate the Maine fishing season with trap hauling, codfish relay races, fish fry, Shrimp Princess pageant, tall tales, and lots more fun.  The Festival celebrates working fishermen and their heritage.  Stop by and pick up a t-shirt from the Boothbay Region High School Seniors, they are raising money for their 2014 Graduating Class. Lots of shops and restaurants will be open for this event as well. Come experience some local fun. You've never seen anything like it.


4/14/2014 from Boothbay Harbor Hotel
Fishermen's Festival will be celebrating its 41st year in 2014! The festival is celebrated each year to focus on the region's commercial fishermen and their families and the important role they play in our community. But, it’s more than ...

3/31/2014 from Boothbay Harbor Hotel
Join us at the Flagship Inn in Boothbay Harbor for the 2014 Fishermen's Festival!  Lobster Boat Races at the Fisherman's Festival                             &nbs...


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"Accommodations are convenient, economical, friendly and clean."