Comfortable Hotel in Boothbay Harbor Maine

Affordable Rooms & Family Suites with easy access to all of Boothbay Harbor & the Botanical Gardens

Finding an affordable home away from home during your getaway to coastal Maine can be a challenge. Many Boothbay Harbor hotels may meet your budget but make you wish you’d just stayed home. We believe you shouldn’t have to choose between comfort and cost!

We offer affordable accommodations with amazing service and comfort. Our friendly staff is eager to welcome you to our award-winning property. Whether you’re traveling on your own, with friends, or with your family, we’ve got rooms that will fit your budget and your needs without skimping on service or lacking the comforts of home.

Planning your getaway to coastal Maine is simple:

  • Choose your traveling companion(s).
  • Pick your dates.
  • Book a room.
  • And get ready to enjoy an amazing time in Boothbay Harbor and the surrounding areas!

Call us today at (207) 633-5094, and let’s start planning your getaway together!

What sets our hotel apart?

Here's Why We're Different

Central Location

Whether you’re headed to downtown Boothbay Harbor or the water’s edge, we’re just a short walk or trolley ride away.

A Great Value

Our amazing service and unexpected comfort at an affordable cost are sure to surprise you!

Amazing Hospitality

Most of our outstanding staff have been with us for over 15 years and are eager to welcome you to Boothbay Harbor.

The Right Amenities

Our award-winning hotel includes amenities such as a pool, hot tub, complimentary breakfast, playground, picnic area, and direct access to walking trails.

Family & Pet Friendly

Bring your whole family – pets included – to our family-friendly & pet-friendly hotel. We’ve even got a special treat for your four-legged family members!

Trusted for Decades

Serving our guests since 1984. We love seeing our favorite guests year after year, as they come back to stay with us again and again!

Featured Awards & Media Mentions

Explore the Flagship Inn in Boothbay Harbor Maine

Central to the Greater Boothbay Area

Situated centrally on the main road in Boothbay Harbor, Flagship Inn & Suites provides guests with easy access to all that the Boothbay Area has to offer. Whether you’re looking to visit the Coastal Maine Botanical Gardens, shop the unique local stores downtown, or play on the water, we’re conveniently located in a quiet setting.

A Great Value

You’re looking for comfort at an affordable cost.
At Flagship Inn & Suites, you’ll find an affordable home away from home. Whether you’re traveling on your own, with a special someone, or you’re bringing the whole family, we’ve got a room that’ll fit your budget and your needs.

Sitting area outside our family friendly hotel in boothbay harbor maine

The Amenities for a Comfortable Stay

Guests are often surprised at the extent of our amenities. Whether it’s the included personal hygiene basics, our complimentary continental breakfast, or the heated outdoor pool, we believe that comfort and service are key to making your coastal Maine getaway unforgettable, and our hotel in Boothbay Harbor wants to feel like your home away from home.

Family & Pet Friendly

When you bring your family on vacation, you want to know that they’ll be comfortable in your chosen accommodations. At Flagship Inn & Suites, we have rooms specifically designed for families of all types – even ones with four-legged friends!

Here's what our guests have to say

"Family owned hotel with the special touches you don’t see at a regular hotel. Flowers everywhere. Very nice and neat and clean property. VERY good prices, .6 miles out of town. Heated salt water pool with towels provided at pool..."
– Bill B. on TripAdvisor
"Was looking for somewhere overnight. Luckily found this place. It was not only affordable it was also immaculate and staff was super friendly. Complimentary breakfast was great. Wish we could stay another night..."
– Ann F. on Yelp