Services & Amenities At Our Maine Inn

The Flagship Inn & Suites offers a full array of services and amenities at our 80+ room hotel in Boothbay Harbor, Maine. We are one of the few motels that are open year-round in Boothbay Harbor and are always eager to welcome you with the finest accommodations.

Whether you’re on a family vacation, are on a romantic getaway, or are traveling for business, our staff is ready and waiting to serve you when you seek comfort at an affordable cost.

Access our best rates when you book direct through our website or by calling (207) 633-5094.

an affordable home away from home during your getaway to coastal Maine | convenient accommodations in Boothbay Harbor Maine

Convenient Location

We feature comfortable accommodations within walking distance of many of the area’s top attractions, including the town center, and we are just a short walk away from the water’s edge in Boothbay Harbor.

Our guests enjoy shopping in unique New England shops and eating at gourmet restaurants, as well as participating in numerous recreational activities, including whale watching, deep-sea fishing, and scenic hiking trails. A trolley to the center of town also has a stop at the hotel’s front doors.

“Convenient location close to downtown but, far enough to be affordable. Good breakfast choices. Have stayed here multiple times. Always meets expectations. Clean, comfortable and convenient.” – Charles on


Chances are you will be busy visiting the many attractions that surround us, but for your convenience, there is a playground for the kids, laundry facility across the street, Hannaford grocery store next door, or you can take a nice walk through the Penny Lake Preserve, just steps from the Inn.

“Much closer to Boothbay’s main town than I realized. The included breakfast was amazing. Maintained beyond perfection by Cindy, who also treated my kids with such kindness. The pool was perfect temperature and was surrounded by gorgeous foliage. The rooms were basic. But the beds were very comfortable… Walking distance to the grocery store, movie theater, two ice cream shops (we preferred the down east one next to the theatre). There’s a small but convenient playground here for the kids too!” – Keith on

Our Standard Room Amenities

When you choose to stay at Flagship Inn, you don’t have to choose between comfort and cost. The following amenities come standard with all of our rooms:

    • desk or activity table
    • private full bath
    • mini-fridge
    • flat-screen TV with cable and HBO
    • iron & ironing board
    • hairdryer
    • personal amenities
    • air conditioning
    • free newspaper
    • iron and ironing board
    • free local and long-distance calls
    • free wireless internet
    • direct-dial phone with voice mail
    • wake-up call
    • electronic door lock
    • AM/FM radio alarm clock
    • continental breakfast

We also have the following optional amenities in select rooms:

  • rollaway beds
  • pet-friendly rooms
  • jacuzzi
  • adjoining rooms
  • microwave

After a day of sightseeing and activities, our guests can enjoy the heated outdoor pool and hot tub, prepare and eat a meal on grills in the picnic area, or check their email with our complimentary wireless internet, available throughout the hotel.

For your safety, there is no service for stayovers.

Heated Outdoor Pool & Hot Tub

Our comfortable and friendly Boothbay Harbor hotel features a large outdoor heated pool and hot tub for you to enjoy throughout the late spring and summer season, in addition to our many amenities.

“The pool was clean, warm, and there was always white towels at the pool…and they were brilliantly white.” – Mary on

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“The pool was perfect temperature and was surrounded by gorgeous foliage.” – Keith on

Perfect for families with kids or travelers looking to relax in comfort, a visit to our outdoor heated pool and hot tub is sure to be a highlight of your stay with us during the spring and summer months!

Complimentary Continental Breakfast

All of our guests are invited to join us for a complimentary continental breakfast each morning.


Our continental breakfast includes:

  • eggs
  • sausage or bacon
  • waffles or pancakes
  • cereals
  • yogurt
  • fruit salad
  • pastries
  • juice
  • coffee

“The continental breakfast was well appointed. Staff in the dining room were awesome and deserve much praise. They helped out the little ones. Kept all the serving vessel full and clean. All of them were pleasant, cheerful and nice to talk with. The dining room was clean, open and airy.” – Kim H on TripAdvisor

We also serve fresh baked cookies each afternoon from 4-7 pm!

Pet-Friendly Rooms

Don’t leave your furry family member behind when you visit Boothbay Harbor. We offer pet-friendly rooms, and we even have special amenities for our four-legged guests!

“We booked this because it is pet friendly. Our room was very very clean even though it is the pet room. They also left treats and toys for our dogs.” – Kallie F on Yelp


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Families & Children

Seeing families make memories together makes us smile! Our comfortable accommodations at an affordable cost offer families a great location to stay during their travels to Boothbay Harbor.

We offer family suites and adjoining rooms to make lodging more convenient for larger families, and our property has many family-friendly features.

  • heated outdoor pool
  • grill and picnic area
  • complimentary continental breakfast
  • access to a wildlife preserve and walking trails
  • nearby laundry facility
  • close to a grocery store

family-friendly hotel in Boothbay Harbor Maine

Bring your family to Boothbay Harbor and Flagship Inn & Suites! Different specials are available each season so be sure to view our specials before making a reservation for your family vacation.