When you visit coastal Maine, we know you have a choice in accommodations, and we thank you for choosing Flagship Inn & Suites in Boothbay Harbor, Maine. We aim to make your stay with us memorable for all the right reasons (like amazing service and comfort at an affordable cost), and we appreciate it when our guests take the time to share their experience with us by leaving a review. Thank you for visiting Flagship Inn & Suites – we hope to see you again soon!

– The Staff at Flagship Inn & Suites


We stayed here for 3 nights and at first thought we had made a mistake. However we had a very pleasant stay. The rooms may be basic but they are very clean. The staff can not do enough for you and the breakfast is fine. I really liked the pool which was spotlessly clean. There is a supermarket only yards from the hotel. The hotel is only a couple of minutes drive from the lovely town of Boothbay Harbour. – iaindaza on TripAdvisor


Family owned hotel with the special touches you don’t see at a regular hotel. Flowers everywhere. Very nice and neat and clean property. VERY good prices, .6 miles out of town. Heated salt water pool with towels provided at pool. Nice outdoor pool. Continental breakfast was in restaurant facility next door. Very nice. CLEAN and modern rooms. WiFi. Newer motel. Great customer service by desk and room cleaning services. Would definitely stay again. – Bill B on TripAdvisor
Could not have been more pet friendly! Highly recommend. Not fancy, but clean and friendly. Great free breakfast. Within walking distance to town and food market. On trolley line so the girls went shopping! – dllacasse on TripAdvisor
We have been staying at Flagship Inn for several years when we want to visit Boothbay Harbor in February or March each year. The rooms are clean with comfortable beds and the people who run the Inn are very nice and accommodating to us. There are 2 stories and we ask for the first floor and they always meet our request. They are helpful with local info also. They provide a very nice breakfast for their guests with coffee, juices, tea, milk, bagels, English muffins, toasts, pre-made cooked eggs for breakfast sandwiches, and waffles. Also fresh fruit is available, yogurt and muffins. The lady who runs the breakfast room is very nice and friendly. Great value and always a pleasant stay. – easyriderNh on TripAdvisor
The motel was extremely clean. We brought our 8 lb dog, and stayed in a pet room. Breakfast is in a separate building. Hard boiled eggs, biscuits & gravy, toast, bagels, yogurt & trail mix. The people who cleaned or room, were the best. Left doggie treats for our dog. – Carl M on Yelp
We stayed for one night in the pet friendly rooms with our two dogs. The room was exceptionally clean and there was a “doggy bag” left for the dogs to enjoy. The hotel is quiet and well maintained. The staff is friendly and the breakfast was simple but good. There are waking trails off the back of the property that was perfect for the dogs. The Inn is close to Boothbay Harbor. Overall a great price for a great stay! – Makenna A on Yelp

A pleasant surprise! Nothing fancy, but clean rooms, good breakfast and very kind staff made this a lovely stay! – Brittney J on Yelp


Was looking for somewhere overnight. Luckily found this place. It was not only affordable it Was also immaculate and staff was super friendly. Complimentary breakfast was great. Wish we could stay another night. We will definitely come back here again. – Ann F on Yelp


This is a motel. It’s nothing fancy. It’s basic but it’s got absolutely everything you want. GREAT for the price. Gorgeous pool, gorgeous hot tub (very clean), nice people at the desk. You can bring your dog. They gave my dog a treat. The dog-friendly room was clean. I got the feeling you know…there’d been a dog in there if you know what I mean. But it was a dog room and very clean. Smelled fine. Great breakfast. I’ll be back. – Oona O on Yelp


We booked this because it is pet friendly. Our room was very very clean even though it is the pet room. They also left treats and toys for our dogs. It is just outside of Boothbay harbor downtown district, so very quiet. But it is close enough that you can walk into town in about 15-20 minutes which we suggest since parking in the harbor can be tough to find. They also serve a very good continental breakfast as part of the room rate. – Kallie F